PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G369600.1.p
Common NameLOC101756949, SETIT_019578mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 216aa    MW: 22105.2 Da    PI: 7.9427
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G369600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.72e-38271281101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrr+C+++Cv+apyf ++q +++fa++hk+FGasn +kll++lp  +r +a+ +++yeA+ar+rdPvyG+v+ i++lqqq++ l
  Seita.1G369600.1.p  27 PCGACKFLRRRCVPECVFAPYFSSDQgAARFAAIHKVFGASNASKLLSHLPAADRCEAVVTITYEAQARLRDPVYGCVAQIFALQQQVAIL 117
                         7************************989*************************************************************** PP

              DUF260  91 kaelallkeel 101
                         +a+l ++k++l
  Seita.1G369600.1.p 118 QAQLMQAKAQL 128
                         ****9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.05526128IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3727125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAGATASGGA AAAAAAAAAG ATGAGSPCGA CKFLRRRCVP ECVFAPYFSS DQGAARFAAI  60
HKVFGASNAS KLLSHLPAAD RCEAVVTITY EAQARLRDPV YGCVAQIFAL QQQVAILQAQ  120
LMQAKAQLAC GVQQGTSPVS HHQWPADLTA LLRQDAARRP GPGAGSLDDC FVPELMAAGF  180
RDDVAAAAAQ HCAKADAGDL QYLAQAIMRS PNYSL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641871e-120AK064187.1 Oryza sativa Japonica Group cDNA clone:002-104-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954418.11e-152PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB79e-60LBD16_ARATH; LOB domain-containing protein 16
TrEMBLK3YZ701e-152K3YZ70_SETIT; Uncharacterized protein
STRINGSi019578m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105993443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-42lateral organ boundaries-domain 29